PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC29477_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 154aa    MW: 16679.8 Da    PI: 8.253
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC29477_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.29.9e-3446102459
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                  ++YkeClkNhAa+lG+ha+DGCgE+mps+++  +++++l+CaACgCHRnFHRre+++
  RrC29477_p1  46 FTYKECLKNHAAALGSHALDGCGEYMPSPSSVsTDPTSLQCAACGCHRNFHRREPDK 102
                  68**************************9998899*******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015664.3E-314799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2747100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.2064899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1648103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MTTHTTITPP PKSPEPEPET PTRIQPAKPL SFSNGVIKRH HPPLLFTYKE CLKNHAAALG  60
SHALDGCGEY MPSPSSVSTD PTSLQCAACG CHRNFHRREP DKDSSIPPPP SSVAATVEYQ  120
PHHRHHPPPP PQLAPLPRSP NSSSPPPISS SYML
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534321e-119AK353432.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-43-G18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405598.12e-62zinc-finger homeodomain protein 10
SwissprotQ9FIW93e-48ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBLE4MY355e-61E4MY35_EUTHA; mRNA, clone: RTFL01-43-G18
TrEMBLV4NL045e-61V4NL04_EUTSA; Uncharacterized protein
STRINGXP_006405598.18e-62(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.14e-37homeobox protein 23
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]