PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC29477_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 154aa MW: 16679.8 Da PI: 8.253 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.2 | 9.9e-34 | 46 | 102 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lG+ha+DGCgE+mps+++ +++++l+CaACgCHRnFHRre+++ RrC29477_p1 46 FTYKECLKNHAAALGSHALDGCGEYMPSPSSVsTDPTSLQCAACGCHRNFHRREPDK 102 68**************************9998899*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 4.3E-31 | 47 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-27 | 47 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.206 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-16 | 48 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MTTHTTITPP PKSPEPEPET PTRIQPAKPL SFSNGVIKRH HPPLLFTYKE CLKNHAAALG 60 SHALDGCGEY MPSPSSVSTD PTSLQCAACG CHRNFHRREP DKDSSIPPPP SSVAATVEYQ 120 PHHRHHPPPP PQLAPLPRSP NSSSPPPISS SYML |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353432 | 1e-119 | AK353432.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-43-G18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405598.1 | 2e-62 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9FIW9 | 3e-48 | ZHD10_ARATH; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | E4MY35 | 5e-61 | E4MY35_EUTHA; mRNA, clone: RTFL01-43-G18 | ||||
TrEMBL | V4NL04 | 5e-61 | V4NL04_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405598.1 | 8e-62 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39760.1 | 4e-37 | homeobox protein 23 |
Publications ? help Back to Top | |||
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