PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2906_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 18929.6 Da PI: 10.5466 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta++Aa+a++aa+++++g+ RrC2906_p1 21 RYRGVRKRP-WGRYAAEIRDPRK---KTRVWLGTFDTAQQAARAYDAAAREFRGA 71 59*******.**********843...6*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-22 | 21 | 80 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.57E-19 | 21 | 80 | No hit | No description |
PROSITE profile | PS51032 | 24.342 | 21 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-14 | 21 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 21 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-11 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MTKMGLKPDP NPIQSNAKEI RYRGVRKRPW GRYAAEIRDP RKKTRVWLGT FDTAQQAARA 60 YDAAAREFRG AKAKTNFPTS LELKANYGGY SRSPSQSSTV DSASPTAARL VTPPQLELSL 120 GNGGACYQIP VARPVYFFNM TAFPLAATCG VELGRRLSQY EIWGGFYIWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 17 | 83 | 10 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF499716 | 1e-107 | AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018447839.1 | 1e-107 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
Swissprot | O80340 | 1e-62 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3P6BVV6 | 2e-88 | A0A3P6BVV6_BRACM; Uncharacterized protein | ||||
STRING | Bra030957.1-P | 6e-88 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-55 | ethylene responsive element binding factor 4 |