PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2878_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 203aa    MW: 23994.7 Da    PI: 10.6196
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2878_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v  +G++ W+ Iar+m+ gRt+k+c++rw++ 
       RrC2878_p2 16 RGHWKPSEDSKLKELVGVFGPKKWNHIARKMQ-GRTGKSCRLRWFNQ 61
                     899*****************************.***********996 PP
2Myb_DNA-binding54.42.8e-1768110145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + ++++eE+e+l+++++ +G++ W++Ia+ ++ gRt++ +k++w+
       RrC2878_p2  68 KSAFSEEEEEKLLEVHRHFGNK-WSLIAKLFP-GRTDNAVKNHWH 110
                      578*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8741162IPR017930Myb domain
SMARTSM007171.9E-131564IPR001005SANT/Myb domain
SuperFamilySSF466891.04E-2816109IPR009057Homeodomain-like
PfamPF002494.5E-151661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251769IPR009057Homeodomain-like
CDDcd001671.29E-111960No hitNo description
PROSITE profilePS5129426.61563117IPR017930Myb domain
SMARTSM007171.3E-1467115IPR001005SANT/Myb domain
PfamPF002491.3E-1568110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2270117IPR009057Homeodomain-like
CDDcd001677.35E-682110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MHQENKRKQL CKVCTRGHWK PSEDSKLKEL VGVFGPKKWN HIARKMQGRT GKSCRLRWFN  60
QLDPRITKSA FSEEEEEKLL EVHRHFGNKW SLIAKLFPGR TDNAVKNHWH ILMARKMRKQ  120
SASYSKSRKR QTPSPYEITS MNLQPTFNLF PGRVGDERTE LKNYSWKMPK EESANLRDQF  180
LLEEYCSMRM SMQFIDFLGV GAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-33161174105MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-331511726128MYB TRANSFORMING PROTEIN
1mse_C4e-33131171105C-Myb DNA-Binding Domain
1msf_C4e-33131171105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463037.11e-137PREDICTED: transcription factor MYB59-like
SwissprotQ9SEZ41e-59MY105_ARATH; Transcription factor MYB105
TrEMBLA0A397ZLD81e-128A0A397ZLD8_BRACM; Uncharacterized protein
TrEMBLM4EA451e-128M4EA45_BRARP; Uncharacterized protein
STRINGBra025652.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.22e-73myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]