PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28757_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 79aa    MW: 9019.3 Da    PI: 10.9374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28757_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.8e-20757155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  RrC28757_p1  7 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 57
                 89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.2E-13757IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22767IPR016177DNA-binding domain
CDDcd000186.39E-28767No hitNo description
PROSITE profilePS5103221.904865IPR001471AP2/ERF domain
SMARTSM003803.8E-31871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-30866IPR001471AP2/ERF domain
PRINTSPR003671.4E-9920IPR001471AP2/ERF domain
PRINTSPR003671.4E-93147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MEGPSSSKYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS PEKAARAFDA ALFCLRGSAA  60
KFNFPDNPPV ISGWQNMSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18373980Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1915KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449728.14e-48PREDICTED: ethylene-responsive transcription factor ERF017-like
RefseqXP_018449740.14e-48PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-45ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A3P6GJX93e-45A0A3P6GJX9_BRAOL; Uncharacterized protein
TrEMBLM4DJ409e-46M4DJ40_BRARP; Uncharacterized protein
STRINGBra016518.1-P1e-46(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]