PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC28733_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 82aa MW: 9384.8 Da PI: 11.2476 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r +lg++ t+e Aa+a++ a +l+g RrC28733_p1 22 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 71 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.4E-19 | 2 | 80 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 22 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.787 | 22 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-34 | 22 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.6E-13 | 23 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.33E-26 | 23 | 81 | No hit | No description |
PRINTS | PR00367 | 3.0E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 23 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MEGVANVAVS SGPTTTRKRE RPYKGIRMRK WGKWVAEIRE PNKRSRLWLG SYSTPEAAAR 60 AYDTAVFYLR GPTARLNFPE LL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-16 | 21 | 79 | 4 | 63 | ATERF1 |
3gcc_A | 3e-16 | 21 | 79 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ249814 | 9e-99 | DQ249814.1 Brassica rapa subsp. pekinensis cDREB mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434325.1 | 4e-48 | PREDICTED: ethylene-responsive transcription factor ERF010-like | ||||
Swissprot | Q9FH94 | 8e-45 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A3P6B7D2 | 6e-47 | A0A3P6B7D2_BRACM; Uncharacterized protein | ||||
STRING | Bo7g063980.1 | 4e-46 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 3e-47 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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