PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2852_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 266aa MW: 29342.9 Da PI: 7.8034

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2852_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	42.5	1.4e-13	27	56	25	54
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYR 54 e+AtPkti+++m+vkgLtl+h+kSHLQ R RrC2852_p1 27 EQATPKTIMRVMGVKGLTLYHLKSHLQVQR 56 58*************************877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-13	13	56	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-7	15	57	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.8E-8	26	57	IPR006447	Myb domain, plants
Pfam	PF14379	4.5E-12	47	79	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MCVQGDSGLV LTTDPKPRLR WTVELHEQAT PKTIMRVMGV KGLTLYHLKS HLQVQRHLQL 60 RIEAQGKYMK SILERACQTL AGENMAAAVA AGGGYKANLG SSSLSAAVGP QSHPLSFPPF 120 QDLNIYGNTT DQVLGQHNFH HQNIENHYTT NNAADTNIYL GKKRPNPSYG TNDVRKELLM 180 WSDQDQELSG NQAIDDEHRI QIQMATHVST DLDSLSEIYE RKSGLSGDEG NNGGKFLERP 240 SPRRSPLSPM MNPNGGLIQG RNSPFG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189209	0.0	AC189209.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB007M04, complete sequence.
GenBank	AC189312	0.0	AC189312.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034L08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457179.1	1e-171	PREDICTED: myb family transcription factor APL
Swissprot	Q9SAK5	1e-153	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0D3D1U4	1e-164	A0A0D3D1U4_BRAOL; Uncharacterized protein
STRING	Bo6g123880.1	1e-165	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-133	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]