PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2848_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 320aa    MW: 35870 Da    PI: 7.662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2848_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
       RrC2848_p5 14 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.035965IPR017930Myb domain
SuperFamilySSF466893.15E-221199IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002496.1E-171461IPR001005SANT/Myb domain
CDDcd001671.19E-111661No hitNo description
PROSITE profilePS500904.46162103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-1265108IPR009057Homeodomain-like
SMARTSM007170.0666105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRSPCCDKA GLKKGPWTPE EDQKLLAYIE EHGHGSWRSL PEKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SVQEEQTIIQ LHALSETAKR TDNEIKNYWN THLKKRLVKM GIDPVTHKHK  120
NETLMSSTGQ SKSAAATLSH MAQWESARLE AEARLARESK LLHLQHYQNK KAAAPNHCLA  180
HKASANWTKP NRGNGDQQLE SPTSTVTFSE NHHLMIMPSG ENNNVPNMNE FAVSSSTSSD  240
VKDSDHDWMR QINCPTEGLT SLLLGDSADR SLSTVKNDEA AAGAVAVNES EYSYYEDNKN  300
YWNSILNLVD SSPSDSSTMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-17121075108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667330.0KC966733.1 Brassica napus MYB transcription factor 106 (MYB106.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441451.10.0PREDICTED: transcription factor MYB34
SwissprotQ9LE631e-173MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0D3AG380.0A0A0D3AG38_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G1W60.0A0A3P6G1W6_BRAOL; Uncharacterized protein
STRINGBo1g157620.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-152myb domain protein 106