PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC28408_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18282.4 Da PI: 5.5235 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.1 | 3.4e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++lp+++r+da++++ yeA+ r++dP+yG+v+ i++lqqq+ +l+a++ ll RrC28408_p1 7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISHLPDHDRDDAVRTISYEAQSRLHDPIYGCVSQIFSLQQQVVSLQAQVFLL 104 7***********************9979******************************************************************9888 PP DUF260 98 kee 100 +ee RrC28408_p1 105 REE 107 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.763 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-36 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD 60 RDDAVRTISY EAQSRLHDPI YGCVSQIFSL QQQVVSLQAQ VFLLREEASR KSTQGDCSEQ 120 GKFLAQDTPQ DLHSWFHQVV SDSSLNQMSD FASTSMDRDE SLLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473850 | 1e-128 | AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482384.1 | 1e-115 | PREDICTED: LOB domain-containing protein 14-like | ||||
Swissprot | Q9SJW5 | 7e-88 | LBD14_ARATH; LOB domain-containing protein 14 | ||||
TrEMBL | A0A3P6CG53 | 1e-107 | A0A3P6CG53_BRACM; Uncharacterized protein (Fragment) | ||||
STRING | Bra021737.1-P | 1e-107 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31310.1 | 3e-73 | LOB domain-containing protein 14 |
Publications ? help Back to Top | |||
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