PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2816_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 20372.1 Da PI: 9.7192 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.5e-06 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H RrC2816_p4 66 YVCEICNQGFQRDQNLQMHRRRH 88 9*********************9 PP | |||||||
2 | zf-C2H2 | 15.3 | 5.7e-05 | 145 | 166 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ RrC2816_p4 145 ICERCSKGYAVQSDYKAHLKTC 166 7*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.4E-5 | 63 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 65 | 88 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0067 | 66 | 84 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 108 | 138 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 135 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 110 | 144 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MIDYERSKNI NHHQNPPPSS SSSDLLPDGN GAAVTQKRKR RPAGTPDPEA EVVSLSPRTL 60 LESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRETT EEVKKRVYVC PEPTCLHHNP 120 CHALGDLVGI KKHFRRKHSN HKQWICERCS KGYAVQSDYK AHLKTCGTRG HSCDCGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-12 | 142 | 176 | 5 | 39 | Zinc finger protein JACKDAW |
5b3h_F | 6e-12 | 142 | 176 | 5 | 39 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189489 | 0.0 | AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018452684.1 | 1e-132 | PREDICTED: protein indeterminate-domain 14 isoform X1 | ||||
Refseq | XP_018452686.1 | 1e-132 | PREDICTED: protein indeterminate-domain 14 isoform X2 | ||||
Swissprot | Q9C9X7 | 1e-114 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | V4KMC6 | 1e-115 | V4KMC6_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.26959s0085.1.p | 1e-118 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-116 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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