PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC28148_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 183aa MW: 20857.7 Da PI: 7.2117 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 52.4 | 1.3e-16 | 86 | 129 | 49 | 92 |
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 asdkcq+ek kt+ng+dll a++tl fe+y+eplk+y ++y e RrC28148_p1 86 RASDKCQKEKWKTVNGEDLLRAMSTLDFENYLEPLKLYHARYME 129 59****************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00435 | 8.6E-5 | 1 | 168 | IPR013499 | DNA topoisomerase I, eukaryotic-type |
SuperFamily | SSF56349 | 1.44E-14 | 22 | 87 | IPR011010 | DNA breaking-rejoining enzyme, catalytic core |
Pfam | PF01028 | 1.2E-19 | 23 | 87 | IPR013500 | DNA topoisomerase I, catalytic core, eukaryotic-type |
Gene3D | G3DSA:3.90.15.10 | 5.3E-20 | 23 | 87 | IPR014711 | DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type |
SuperFamily | SSF47113 | 2.15E-12 | 87 | 164 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.4E-16 | 88 | 162 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.4E-6 | 91 | 109 | No hit | No description |
PRINTS | PR00615 | 1.4E-6 | 110 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006265 | Biological Process | DNA topological change | ||||
GO:0005694 | Cellular Component | chromosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003917 | Molecular Function | DNA topoisomerase type I activity | ||||
GO:0003918 | Molecular Function | DNA topoisomerase type II (ATP-hydrolyzing) activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MNMGKGVPVP ECPIETLMER PGSALKGQSD KEKYEKAKNL TNNIDNIRAT FTKTFTSKDV 60 TKKQIAVTTY LIDKLAVRAG NEKIIRASDK CQKEKWKTVN GEDLLRAMST LDFENYLEPL 120 KLYHARYMEP FNDWSNAGNR GGDGFLSEEE IRARSNETLE NEDIQQWLFL ACLHCPCRGC 180 EAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2b9s_A | 3e-14 | 14 | 83 | 226 | 295 | topoisomerase I-like protein |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.7 | 2e-19 | nuclear factor Y, subunit B1 |