PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC28070_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | SBP | ||||||||
Protein Properties | Length: 159aa MW: 16947.8 Da PI: 10.865 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 104.9 | 5.7e-33 | 70 | 140 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +dl++ak y++rh+vC +hsk+p+v+v+g+eqr fh+l+efD ekrsCrrrLa+hnerrrk+q+ RrC28070_p1 70 RCQVEGCGMDLTNAKGYYSRHRVCGMHSKTPKVTVAGIEQR-------FHQLQEFDLEKRSCRRRLAGHNERRRKPQP 140 6**************************************97.......7**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.3E-25 | 63 | 125 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 24.273 | 68 | 138 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.67E-32 | 69 | 142 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.4E-22 | 71 | 137 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MNMGSNSGQG RGPGQAESGG SSNESSSFSG GLMFGQKIYF EDGGGGSSSS GGSNRRVRGG 60 GSGQSSPIPR CQVEGCGMDL TNAKGYYSRH RVCGMHSKTP KVTVAGIEQR FHQLQEFDLE 120 KRSCRRRLAG HNERRRKPQP ASLSVLSSRF GRIAPSLYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-23 | 61 | 137 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC618319 | 1e-104 | KC618319.1 Cardamine flexuosa SPL9 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478659.1 | 3e-88 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 3e-74 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | M4DK63 | 5e-81 | M4DK63_BRARP; Uncharacterized protein | ||||
STRING | Bra016891.1-P | 8e-82 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-68 | squamosa promoter binding protein-like 9 |