PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2793_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 71aa MW: 8110.31 Da PI: 11.4629 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.7e-16 | 13 | 56 | 2 | 49 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 +ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a RrC2793_p1 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVA 56 8*****998.**********943...5******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.80E-21 | 12 | 60 | No hit | No description |
SuperFamily | SSF54171 | 5.95E-16 | 13 | 61 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-23 | 13 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.241 | 13 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-21 | 13 | 68 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-8 | 13 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFLLL 60 APTIFPRQRS F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016162 | 8e-65 | AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence. | |||
GenBank | AC016163 | 8e-65 | AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence. | |||
GenBank | BT010999 | 8e-65 | BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds. | |||
GenBank | BT014816 | 8e-65 | BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds. | |||
GenBank | CP002684 | 8e-65 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691101.1 | 3e-36 | ethylene-responsive transcription factor ERF020-like | ||||
Refseq | XP_018455497.1 | 3e-36 | PREDICTED: ethylene-responsive transcription factor ERF020 | ||||
Refseq | XP_022544890.1 | 3e-36 | ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | Q9C9I8 | 4e-33 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A3P6BLW3 | 5e-35 | A0A3P6BLW3_BRACM; Uncharacterized protein | ||||
STRING | Bo6g113060.1 | 7e-35 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 1e-35 | ERF family protein |
Publications ? help Back to Top | |||
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