PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC27853_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 19378 Da PI: 8.9414 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.1e-06 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C++ F r nL+ H r+H RrC27853_p1 73 YICEICNQGFQRDQNLQMHRRRH 95 89********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-5 | 70 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-6 | 72 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0065 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 115 | 145 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence Send to blast |
MKTDQGAVVM LDDDASNKNT TNRRCVVFSS SEPFLSSSEN GVTTTKTFCF FASDPDAEVV 60 SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDSNIEV KKRVYVCPEP 120 TCLHHDPFHA LGDLVGIKKH FRRKHSNHKQ WVCEKCSKGY AVQSDYKA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM222924 | 1e-158 | HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013704051.1 | 1e-106 | protein SHOOT GRAVITROPISM 5-like | ||||
Refseq | XP_013736148.1 | 1e-106 | protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | F4IPE3 | 5e-86 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A3N6S3J6 | 1e-105 | A0A3N6S3J6_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6EXS1 | 1e-105 | A0A3P6EXS1_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g080080.1 | 1e-105 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01940.1 | 8e-87 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
---|---|---|---|
|