PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2778_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 380aa    MW: 43538.9 Da    PI: 5.5583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2778_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11208250754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er+RR+riN+++  Lr ++P+      +K++K  +   Av+YI++L
  RrC2778_p2 208 HSERKRRERINQRIYALRAVVPNV-----TKMNKTGTISDAVDYINQL 250
                 57*********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-910139IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.27E-15192262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-12199255No hitNo description
PROSITE profilePS5088815.034201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-12207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9208250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13208264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVRGGERVKE FLRPFVDSRE WDFCVIWKLG DDPSRFIEWH EHEEEEETTQ KVGSFCRDED  60
NKHHIRTLAC ESLSRFPLFV PLYPGIHGEV VMSKTPKWLV NSSPGSKQDI FSTRVLVPVR  120
DGLVELFSFI MKPVDESMVD LIISRCNAFF EPFPEQALPF KIIPRAEESM LMHKDVEDDA  180
AMQNAMDVPD SSNKKMAPKE NFKSKNLHSE RKRRERINQR IYALRAVVPN VTKMNKTGTI  240
SDAVDYINQL LVEKQKLEGE LRGFNEVECR GIIAAEVEES AVANSQAGKV LSGLNKKVYN  300
EVNLEVYETG ERGFLIRVEQ EHKRDGFKRL LEAVDSCGLE IIDVNFTRLG LTVMTVLNAN  360
KDGTTIENLR DLLLKMMITN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209214ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432784.10.0PREDICTED: transcription factor bHLH90-like
RefseqXP_018441640.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A397YXG00.0A0A397YXG0_BRACM; Uncharacterized protein
STRINGBra019914.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-172bHLH family protein