PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2775_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 247aa    MW: 28864.3 Da    PI: 6.7197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2775_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++++++G  +W++ +++ g+ R++k+c++rw +yl
       RrC2775_p2 14 RGPWTPEEDQILINYIHLYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP

2Myb_DNA-binding49.31.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++ ++++++ lG++ W++Ia++++ gRt+ ++k+ w+++l
       RrC2775_p2  67 RGNFTPQEEQTIINLHEVLGNR-WSAIAAKLP-GRTDHEIKNVWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.588961IPR017930Myb domain
SuperFamilySSF466891.76E-3010108IPR009057Homeodomain-like
SMARTSM007171.7E-151363IPR001005SANT/Myb domain
PfamPF002492.2E-171461IPR001005SANT/Myb domain
CDDcd001671.49E-111661No hitNo description
PROSITE profilePS5129424.21762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2665117IPR009057Homeodomain-like
SMARTSM007173.5E-1366114IPR001005SANT/Myb domain
PfamPF002492.2E-1467112IPR001005SANT/Myb domain
CDDcd001671.26E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGRAPCCEKM GVKRGPWTPE EDQILINYIH LYGHSNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEQTIIN LHEVLGNRWS AIAAKLPGRT DHEIKNVWHT HLKKRLNKDQ  120
NNNGGVTKDL NRTNETTHED KKSVIVDTTS TQQFRTLQIS NNNKADDMMS YEDISAMVDE  180
SFWSDVISVD FKNSTEKTME DWEGLLDRNS KLNSYNNSKL YNDDMEFWFE VFSSSRRIEE  240
FSDVAEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141177109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474624.11e-179PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX81e-153MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A3P5ZHS61e-162A0A3P5ZHS6_BRACM; Uncharacterized protein
STRINGBra022831.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-146myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]