PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2765_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 324aa    MW: 36284.5 Da    PI: 9.6206
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2765_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057597123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  RrC2765_p1 75 FICEICNKGFQRDQNLQLHKRGH 97
                89******************988 PP
2zf-C2H214.20.00013152174123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H +t+
  RrC2765_p1 152 WKCDKCSKKYAVQSDWKAHAKTC 174
                 58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-67497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.81E-77497No hitNo description
PROSITE profilePS5015710.8037597IPR007087Zinc finger, C2H2
SMARTSM003550.0227597IPR015880Zinc finger, C2H2-like
PfamPF121711.9E-57597IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355150117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.81E-7147172No hitNo description
SMARTSM00355150152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MSNLTSASGD QASVSSGNRT ETSGSNFQYN INPNQQQEEQ CPAPQRKKRN QPGNPDPDAE  60
VMALSPKTLM ATNRFICEIC NKGFQRDQNL QLHKRGHNLP WKLKQRSNKD VIRKKVYVCP  120
EPSCVHHHPS RALGDLTGIK KHFFRKHGEK KWKCDKCSKK YAVQSDWKAH AKTCGTKEYK  180
CDCGTLFSRR DSFITHRAFC DALAEESARA IPNPILIQSS SPHDHQTQQH NINFSSSSQN  240
ITGNNNNLHG HELPTKQEEP HHHFHNIPPW LISSNPNPSG NNANYFPLAS SSASFHHSSP  300
AMSATALLQK AAQMGHSKPT TTPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-37148209364Zinc finger protein JACKDAW
5b3h_F7e-37148209364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101114KLKQRSNKDVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529940.0AK352994.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451546.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-172IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3P6BBU90.0A0A3P6BBU9_BRACM; Uncharacterized protein
TrEMBLM4EQ150.0M4EQ15_BRARP; Uncharacterized protein
STRINGBra030886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-153indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]