PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2750_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 302aa    MW: 33497.2 Da    PI: 4.8491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2750_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15109156253
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                 +  GVr++k +g+W+AeIr+p     +  r +lg+f+t+e A++a+   rk++
  RrC2750_p1 109 KPVGVRQRK-WGKWAAEIRHPI----TkNRTWLGTFDTEEAAHQAYKVKRKEY 156
                 789*****9.**********73....359*********999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.3E-413283IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.70E-18108149No hitNo description
PROSITE profilePS5103216.66109166IPR001471AP2/ERF domain
SMARTSM003806.6E-11109158IPR001471AP2/ERF domain
PfamPF008471.5E-9109157IPR001471AP2/ERF domain
PRINTSPR003679.3E-6110121IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14111158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-18112151IPR001471AP2/ERF domain
PRINTSPR003679.3E-6132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVGIISKQQS LSDMKKPKRS SPQETQQPLR KVRILVNDPY ATDDDSSSDE GEETKMRRIV  60
RVVNFPPLDS VAPPPRAEPA SVSSSQDSTK TISKKAAAAA ASRPRRSKKP VGVRQRKWGK  120
WAAEIRHPIT KNRTWLGTFD TEEAAHQAYK VKRKEYDSLL ANDSVSETSQ CSRSSPPEQD  180
TSASTPTTNK LKEEIKIAPA TGVDSSKEVL FGFNFAELPI PDLGFFAEDE GQMAADLGFF  240
AEENLDCLFT DDQFDDFAML GFEDSGGGPS ELPDWDFPDV EFDSSFFFAD HHQHIPLKSF  300
AA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452100.10.0PREDICTED: ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-78EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A0D3CYZ81e-159A0A0D3CYZ8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FZF41e-159A0A3P6FZF4_BRAOL; Uncharacterized protein
STRINGBo6g106990.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-70ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]