PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC272_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 317aa    MW: 35157.6 Da    PI: 9.8825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC272_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.6e-1464108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        RrC272_p5  64 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 108
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1758114IPR009057Homeodomain-like
PROSITE profilePS5129415.659113IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-761114IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-1862111IPR006447Myb domain, plants
SMARTSM007171.3E-1163111IPR001005SANT/Myb domain
PfamPF002492.1E-1264108IPR001005SANT/Myb domain
CDDcd001673.74E-966109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVSLNARPAP FFDSVSMSLP GLDSRASDSD DGFGLTPIAR RDAASFREDT TAKIRKPYTI  60
KKSRENWTEQ EHDKFLEALH LFDRDWKKIE AFVGSKTVVQ IRSHAQKYFL KVQKSGANEH  120
LPPPRPKRKA SHPYPHKAPK NFALPSHAVG SLPASSAPLV QPAYLYSSSS DSRSLVGNPP  180
PASSSSSSQN HALTKPVIQE EPGVSATALP KNRCCSTGNK EVTQRLPAVR ESNDDDDDED  240
SCGKPRRVMP NFAEVYRFIG SVFDPNTSGH LQRLKQMDPI NIETVLLLMR NLSINLTSPE  300
FSEQRKLISS YSSKALK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372123e-71AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene).
GenBankAY5195133e-71AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
GenBankBT0247113e-71BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456205.10.0PREDICTED: protein REVEILLE 5
SwissprotC0SVG51e-149RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A397XRG41e-174A0A397XRG4_BRACM; Uncharacterized protein
STRINGBo9g003580.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-144MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]