PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC27228_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 37868.8 Da PI: 10.3562 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.2e-05 | 198 | 219 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H RrC27228_p1 198 CSQCGEVFTKLESLELHQAVrH 219 ******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.432 | 196 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 198 | 219 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 6.62E-9 | 221 | 334 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 3.2E-4 | 223 | 337 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MALPTLLPEN SEPPKHTPPQ TKRKKRENRT DQTKTPHKPH KQKAVASQKQ PSSWDQIKNL 60 LTCKQIEGSR IHDPSRNSQP GPPTTTHLLS PSKLGSSCSS ICRFRDVAHG NTRVVHRADH 120 SPDVANSATP NSETRLLTRK PGQHGSSSSS RSLTYGSTTS SATTSFKAMQ FRKLSGCYEC 180 HMIVDPSRYP ISPRVRACSQ CGEVFTKLES LELHQAVRHA VSELGPEDSG RNIVEIIFKS 240 SWLKKDSPIC KIERILKVHN TQRTIQRFED CRDAVKARAL QTTRKDARCA ADGNELLRFH 300 CTTLACSLGS RGSSSLCSNL PSCGVCNVIR HGFQGRSGAG GANAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352975 | 0.0 | AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470540.1 | 0.0 | PREDICTED: uncharacterized protein LOC108842198 isoform X1 | ||||
Refseq | XP_018470541.1 | 0.0 | PREDICTED: uncharacterized protein LOC108842198 isoform X2 | ||||
TrEMBL | A0A3N6RY12 | 0.0 | A0A3N6RY12_BRACR; Uncharacterized protein | ||||
STRING | Bo2g085310.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1916 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-164 | C2H2-like zinc finger protein |