PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2712_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 319aa    MW: 35850 Da    PI: 9.8807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2712_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.7e-32131189260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK+vkgse+prsY+rCt+++C +kkkve+s   ++++ei+Y+g+Hnh+k
  RrC2712_p6 131 EDGYNWRKYGQKQVKGSENPRSYFRCTYPNCVTKKKVETSLMKGHITEIIYKGSHNHPK 189
                 7********************************************************85 PP
2WRKY103.99.1e-33244302159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +d k v++tYeg+Hnh+
  RrC2712_p6 244 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKQVERAFHDAKSVITTYEGKHNHH 302
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-27122190IPR003657WRKY domain
PROSITE profilePS5081123.319125190IPR003657WRKY domain
SuperFamilySSF1182904.58E-25127190IPR003657WRKY domain
SMARTSM007745.5E-33130189IPR003657WRKY domain
PfamPF031062.6E-23131188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-36229304IPR003657WRKY domain
SuperFamilySSF1182906.41E-29236304IPR003657WRKY domain
PROSITE profilePS5081136.162239304IPR003657WRKY domain
SMARTSM007742.7E-37244303IPR003657WRKY domain
PfamPF031061.2E-24245302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGSFNQQRSV PKFKSATPSP LPLSSYFSMP PGLTQADLLD SPLLFTSSNV LPSPTTGTFP  60
LKSLNWKNNG LLTNQNEIKA EDGKEHHFDF AFSTNQTSSP LFPSHFQTRD QALHQVDAPK  120
FESHTGNKTS EDGYNWRKYG QKQVKGSENP RSYFRCTYPN CVTKKKVETS LMKGHITEII  180
YKGSHNHPKP QSTRRSSSTA ATSDVGSHQS GGGEDNVDAK RGKREEAVKE PRVVVQTTSD  240
IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TFTGCCVRKQ VERAFHDAKS VITTYEGKHN  300
HHIPSTPKKD ITPQHDRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-34131305878Probable WRKY transcription factor 4
2lex_A3e-34131305878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300440.0KF430044.1 Brassica rapa WRKY transcription factor 26 (WRKY26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288922.10.0probable WRKY transcription factor 26
RefseqXP_022550422.10.0probable WRKY transcription factor 26 isoform X1
RefseqXP_022550426.10.0probable WRKY transcription factor 26 isoform X2
SwissprotQ9C5T31e-149WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLV5REL50.0V5REL5_BRACM; WRKY transcription factor 26
STRINGBra028707.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-144WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]