PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC26_p13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 650aa MW: 72503.2 Da PI: 5.9709 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.8e-08 | 542 | 590 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E ++lv++v q+G g W+ I + Rt+ ++k++w+++l RrC26_p13 542 AWSLSEVKKLVEGVSQYGVGKWSVIKKLTFsshSYRTPVDLKDKWRNLL 590 7*************************998889*99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.903 | 535 | 594 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-13 | 536 | 597 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-9 | 539 | 592 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-16 | 541 | 600 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.04E-19 | 541 | 591 | No hit | No description |
Pfam | PF13921 | 8.4E-8 | 543 | 601 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 650 aa Download sequence Send to blast |
MGTMFGSVED YGEMFRDTVS QTRDPSLSSE NHIGNPVVYK LVRVAQDGRL VPATDEEMLE 60 VKDLVENNEN DMPIAPDPGQ TEECIFDVGS PSQFLQLDSF EGSGLPFTCN VFLIMKSFVP 120 LGDNFAYPTQ LLYPGLFQQE TVEAYTENLS SRLECKEELV YGSEMLFTLP DTNYQSSNEF 180 PWNQEFVQSE VLLQEPISFS SNGCSIDQSM DDVSAAYSIA TGGSPKAPAL STAASDTGFS 240 RDTDEICLGN LSIKALQETF RATFGRETTC KDKLWLKRKI EMGLIRPRVM PTTSSLTVDD 300 NKLILGGQDN KLISKDTFDE GRAINGKAAP SSPDDFWDSL VDASVECYSG SEDFEGGHRS 360 AKRVRKATRR YIEEISKVEE NQQSKESLIP SKNERSISTV SSGRRVVVTR MVSLGGSIIQ 420 VPYVSHVRRS RPRENIMALG EFHSGLWEVK ATPEESNLNL SQTQLNNDVN RVSGVKSVSG 480 PVQKKVTSHR QSYEDHSKPE VDQDTMEPEY TDSSGDSSDD STYSHADRPI MQSAMRRKHH 540 RAWSLSEVKK LVEGVSQYGV GKWSVIKKLT FSSHSYRTPV DLKDKWRNLL RASFSRTPLN 600 KMGKHGSMAI PSQVLSQVRE LAQKKSHVSP ARKARMVRAS SRHVAAENLR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437101.1 | 0.0 | PREDICTED: uncharacterized protein LOC108809456 | ||||
TrEMBL | A0A078GNN3 | 0.0 | A0A078GNN3_BRANA; BnaA06g11740D protein | ||||
STRING | Bo5g023810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.2 | 0.0 | TRF-like 3 |