PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC26_p13
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 650aa    MW: 72503.2 Da    PI: 5.9709
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC26_p13genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08542590348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +W+  E ++lv++v q+G g W+ I +        Rt+ ++k++w+++l
        RrC26_p13 542 AWSLSEVKKLVEGVSQYGVGKWSVIKKLTFsshSYRTPVDLKDKWRNLL 590
                      7*************************998889*99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.903535594IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-13536597IPR009057Homeodomain-like
SMARTSM007171.0E-9539592IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-16541600IPR009057Homeodomain-like
CDDcd116601.04E-19541591No hitNo description
PfamPF139218.4E-8543601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGTMFGSVED YGEMFRDTVS QTRDPSLSSE NHIGNPVVYK LVRVAQDGRL VPATDEEMLE  60
VKDLVENNEN DMPIAPDPGQ TEECIFDVGS PSQFLQLDSF EGSGLPFTCN VFLIMKSFVP  120
LGDNFAYPTQ LLYPGLFQQE TVEAYTENLS SRLECKEELV YGSEMLFTLP DTNYQSSNEF  180
PWNQEFVQSE VLLQEPISFS SNGCSIDQSM DDVSAAYSIA TGGSPKAPAL STAASDTGFS  240
RDTDEICLGN LSIKALQETF RATFGRETTC KDKLWLKRKI EMGLIRPRVM PTTSSLTVDD  300
NKLILGGQDN KLISKDTFDE GRAINGKAAP SSPDDFWDSL VDASVECYSG SEDFEGGHRS  360
AKRVRKATRR YIEEISKVEE NQQSKESLIP SKNERSISTV SSGRRVVVTR MVSLGGSIIQ  420
VPYVSHVRRS RPRENIMALG EFHSGLWEVK ATPEESNLNL SQTQLNNDVN RVSGVKSVSG  480
PVQKKVTSHR QSYEDHSKPE VDQDTMEPEY TDSSGDSSDD STYSHADRPI MQSAMRRKHH  540
RAWSLSEVKK LVEGVSQYGV GKWSVIKKLT FSSHSYRTPV DLKDKWRNLL RASFSRTPLN  600
KMGKHGSMAI PSQVLSQVRE LAQKKSHVSP ARKARMVRAS SRHVAAENLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437101.10.0PREDICTED: uncharacterized protein LOC108809456
TrEMBLA0A078GNN30.0A0A078GNN3_BRANA; BnaA06g11740D protein
STRINGBo5g023810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3