PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2674_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 366aa MW: 40340.8 Da PI: 6.737

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2674_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.6	0.00043	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H RrC2674_p4 150 YQCKTCDRTFPSFQALGGHRASH 172 9***********99999998887 PP
2	zf-C2H2	13.1	0.00029	228	250	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H RrC2674_p4 228 HECGICGAEFTSGQALGGHMRRH 250 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	2.1E-12	149	174	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.07E-8	149	172	No hit	No description
PROSITE profile	PS50157	10.388	150	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.028	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.07E-8	223	250	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.4E-4	226	252	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.3E-11	227	252	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.93	228	252	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.047	228	250	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	230	250	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSISPPI VEEEVSNVPD SKENAVENLK 60 KDGVITSSSS SASWSSNNNP TLKAEEDEED QDIANCLLLL SQGHSFPQHN QQLKIPHQEI 120 NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF 180 YSNLDLKKSI YENDAASLVT TTNIYNNNRN NNNRSLVAYG KAGNNKVHEC GICGAEFTSG 240 QALGGHMRRH RGAVVVAAAP APIVTVATVA ANTELSLSSM SYDQISDGQD HLVLMPETNK 300 AKKTVVSLDL DLNLPAPEDE NRVNGLSLAL KQKHEQEQEQ EHQPTKQREE PMSLVLSAPS 360 FVDCYY

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSISPPI VEEEVSNVPD SKENAVENLK  60
KDGVITSSSS SASWSSNNNP TLKAEEDEED QDIANCLLLL SQGHSFPQHN QQLKIPHQEI  120
NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF  180
YSNLDLKKSI YENDAASLVT TTNIYNNNRN NNNRSLVAYG KAGNNKVHEC GICGAEFTSG  240
QALGGHMRRH RGAVVVAAAP APIVTVATVA ANTELSLSSM SYDQISDGQD HLVLMPETNK  300
AKKTVVSLDL DLNLPAPEDE NRVNGLSLAL KQKHEQEQEQ EHQPTKQREE PMSLVLSAPS  360
FVDCYY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475499.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A0D3AZP3	0.0	A0A0D3AZP3_BRAOL; Uncharacterized protein
STRING	Bo3g002780.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-142	C2H2 family protein