PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2660_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 873aa    MW: 96813.1 Da    PI: 5.17
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2660_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-172571148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed+ l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
       RrC2660_p3 25 KGQWTPQEDQVLCKAVERFQGKNWKKIAECVK-DRTDVQCLHRWQKVL 71
                     799****************************9.************986 PP
2Myb_DNA-binding33.97.3e-11100135743
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 
                      +Ed  ++ +v+++G+  W+tI ++++ gR +kqc++r
       RrC2660_p3 100 DEDTTIIALVEKYGPTKWSTICQHLP-GRIGKQCRER 135
                      79************************.5655555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.9922075IPR017930Myb domain
SuperFamilySSF466894.69E-172383IPR009057Homeodomain-like
SMARTSM007176.2E-142473IPR001005SANT/Myb domain
PfamPF002499.0E-152571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-192683IPR009057Homeodomain-like
CDDcd001671.11E-122871No hitNo description
PROSITE profilePS5129412.11292152IPR017930Myb domain
SMARTSM007172.4E-495150IPR001005SANT/Myb domain
PfamPF002492.9E-9100135IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-10100148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-13100145IPR009057Homeodomain-like
CDDcd001671.81E-8100135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MKTPNLPQDG TQKGRTCGPA RRSTKGQWTP QEDQVLCKAV ERFQGKNWKK IAECVKDRTD  60
VQCLHRWQKV LNPELVKGPW SKEVISLYLS IIPTLFDRFD EDTTIIALVE KYGPTKWSTI  120
CQHLPGRIGK QCRERSDNSI KNHWNSSVKK KLDSYYASGL LDQCQSSPLI PLQNKSMASS  180
SSWTPSSGDE GNFRQGADAE ESECSQVSTV FTCSKFTDSP DEVKPANECS TPELPSGAEQ  240
QISNSPSHAE SYYRSFEDVK TIVPEISCDA EPLKKNQNPT EVRTTTATAD HLQGVSDNAN  300
QDCPQLMTHN MDGDGKNEAC QDFENSVRLS DQPSLPNSDT DIHPQPQTLI TDEECCMVLF  360
PNNMKDSYTS DGEQRQNMVD PQKGKGSLCS QSAETRANEI GNIPAFSWHP SNSSDPTLLG  420
ATALERKTDT NDGLLTSHGN DDNDGIPEQP ELSYIPKDLL KLVPLNNFSS PARVKKIHFP  480
IDGKPAEKDK GTLCYEPPRF SSADIPFFSC DLAPSSSDLR PEYSPFGIRQ LMISSMNCAT  540
PLRLWDSPCH DKTPDVMLKD AAKSFSGASS ILKKRHRDFL SPVLDRRKGK MVKSAEASSL  600
AKDFSCLDVM IDDGNTKNKC ASSSEDKEDP KKALESGEVT SDKIDHGTRR SLVYHSDVEM  660
QLSSPAIKAN TVAKDPSNQH EKSVGTVPTG EISTEPPFTT DSIPLSEFAE INTNTAESSV  720
DIIENYSIFD GTPFKKLLET PSPWKSPLLF GSFLPSPKLP PEITFERQLM DKYSLLLLFF  780
YSQDIGCFMS PGERSYDAIG LMKHLSEHTA TAYADALEVL GNDTPETILK KRQMNTSIQG  840
KENQLWSHDQ LENRSQVAAS NSHNINSKLK IES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-34251526159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-34251526159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451436.10.0PREDICTED: myb-related protein 3R-1-like
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLA0A0D3BLR90.0A0A0D3BLR9_BRAOL; Uncharacterized protein
STRINGBo3g171130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]