PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2654_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 239aa    MW: 26756.5 Da    PI: 9.216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2654_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056183123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ Cg+ F++   L  H+++H
  RrC2654_p3 61 YSCSFCGREFKSAQALGGHMNVH 83
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-65887No hitNo description
Gene3DG3DSA:3.30.160.602.5E-45985IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.1546188IPR007087Zinc finger, C2H2
PfamPF139123.7E-66184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRPYACVMER GKCLMSMKLR PLVTRETSDA ALLWPFGEDR AFAAVEEYGS GGGCMWPPRS  60
YSCSFCGREF KSAQALGGHM NVHRRDRARL KQQSLSSSST DQAMPIDYDH QQPQKQHEAH  120
VGSKFPVQEV SRKPNGTKRD ISDVVTSNVL ETSMKRLEHY NNEVKTDLSV GLVNSEFDSR  180
EKLPINGFSS SKKAKTDVSR LPLMLGLVIG VSKINNGHHE ELDLELRLGV HPSKVNLLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-125683229superman protein
2l1o_A2e-125683229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443416.11e-172PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-120RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLA0A0D3EHG41e-143A0A0D3EHG4_BRAOL; Uncharacterized protein
STRINGBo9g176590.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]