PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC26490_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27005.5 Da PI: 7.9948 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 69 | 115 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riNs +++Lr +l + K +Ka+ L k+v+ +k+L RrC26490_p1 69 RNHKEAERRRRERINSHLNKLRNVLSCN-----SKTDKATLLAKVVQRVKEL 115 58***********************997.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.538 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-8 | 69 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-12 | 69 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-12 | 69 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-9 | 72 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00239 | 156 | 221 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MQPETSDQML YSFLTGNELS GGGFSVSGDY MSTMQSLCGS SSSTSSYYPL AISGIGETVA 60 QDRALAALRN HKEAERRRRE RINSHLNKLR NVLSCNSKTD KATLLAKVVQ RVKELKQQTL 120 EISDSDQTLL PSETDEISVL HYGDYSDDGH IIFKASLCCD DRSDLMPDIM EILKSLHMKT 180 LRAEISTLGG RTRSVLVVAA DKEMHGVESV HFLQNALKSL LERSSKSLME RGSGGGERSK 240 RRRA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 79 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478749.1 | 1e-178 | PREDICTED: transcription factor bHLH106 | ||||
Swissprot | O80674 | 1e-146 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1J3GMC5 | 1e-155 | A0A1J3GMC5_NOCCA; Uncharacterized protein | ||||
STRING | Bra016951.1-P | 1e-153 | (Brassica rapa) | ||||
STRING | Bo4g190700.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3642 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-131 | bHLH family protein |
Publications ? help Back to Top | |||
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