PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2618_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 332aa MW: 38375.2 Da PI: 5.2268

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2618_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.4	2.2e-07	179	224	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq RrC2618_p3 179 QSMAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 224 567889****************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.1E-10	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.728	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-10	177	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.6E-5	179	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-8	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.15E-4	196	227	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MPTRQLPSFI FSVSSMDCLS HFFIWEPPIQ LQDCFIPDMD MVIPETDSFF FQTQPQMQFH 60 QPLFKEEAPS QSLLELTDFD SFFDQFLPPQ ETYLPYPKAE LFDETYNFDS FIPTPKRQKL 120 VNSSYHCNTH THTHFPNPNL DFLPEAPVFP EFRVQDFPLV FKAGLGDQDG AKKPKLSSQS 180 MAARERRRRI AEKTHELTKL IPGGQKLNTA EMFQAAAKYV KFLQSQVGIL QMMQTTKKTQ 240 GITDVEIETQ FLLESQAVQE KLSTKEVCLV PCEMVRDLTS EESIWRNLRF LERLTSYCPQ 300 IWLTSFSSKH EALCLLLPVC VLNLCFVLLI SG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189655	0.0	AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475518.1	0.0	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-131	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A0D3B4Y1	1e-172	A0A0D3B4Y1_BRAOL; Uncharacterized protein
STRING	Bo3g028090.1	1e-173	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-132	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]