PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2601_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26510.9 Da PI: 7.4066 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.8 | 2.9e-11 | 59 | 107 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + hn++Er+RR++ Ns f++Lr++lP + ++ ls + + ++YI +L RrC2601_p2 59 KLIHNANERNRRKKTNSLFSTLRSCLPGS----DENLSNPRTISRSMQYIPEL 107 566*************************9....899**************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.449 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.77E-9 | 58 | 112 | No hit | No description |
SuperFamily | SSF47459 | 7.98E-13 | 58 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-11 | 59 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.6E-9 | 60 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-9 | 63 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRPLGPVFPN FGWVSKEEYE RDNLVEDDHS NCTSPDSSLG VSESSEGNRI NNNSAVIKKL 60 IHNANERNRR KKTNSLFSTL RSCLPGSDEN LSNPRTISRS MQYIPELKEQ VKKLTQKKED 120 ILVRISGQRG SYVMPQPKVA SSYVSTVFAT ELTDTEVMVQ ISSSKNHNFS IYNVLSGLEE 180 DGFVLVDVSS SSCWGERLFY TLHLQVDKVD SYKLICEDLS RRVLFLFEKC GKLV |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009102594.1 | 1e-120 | PREDICTED: transcription factor ORG3-like | ||||
Swissprot | Q9M1K1 | 2e-92 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | A0A078JU88 | 1e-122 | A0A078JU88_BRANA; BnaUnng04210D protein | ||||
STRING | Bra014970.1-P | 1e-119 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 7e-95 | bHLH family protein |