PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC2596_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 228aa MW: 25332.7 Da PI: 4.3883 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29 | 2.1e-09 | 50 | 79 | 30 | 59 |
TT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59 +gCp++k+vers+ dp+ + itY +Hnh+ RrC2596_p4 50 PGCPARKQVERSRVDPSKLMITYACDHNHP 79 59***************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 15.204 | 13 | 81 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.0015 | 38 | 80 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-7 | 43 | 79 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.5E-9 | 50 | 81 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-7 | 50 | 81 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MHRRGIQESD DEEDETYNDD LRVEERYIHR LIPGLGESTD KSRSKVRLIP GCPARKQVER 60 SRVDPSKLMI TYACDHNHPF PSAANNKSHH HHRTTAVVLK TAKKEENMEE EYEEEEEATV 120 AAEEPVGLDL SHVDSPLLLG GCYSEVGEFG WFYDASISSS SGSSYGGSFL DVTLESGFSV 180 GGEEDESLYG DLGDLPDCAS VFRRGTVGTE EQRQMCDFGA VPFCDSSR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC246584 | 0.0 | KC246584.1 Brassica napus WRKY transcription factor 69.2 (WRKY69.2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481437.1 | 1e-106 | PREDICTED: probable WRKY transcription factor 69 isoform X2 | ||||
Swissprot | Q93WV5 | 2e-89 | WRK69_ARATH; Probable WRKY transcription factor 69 | ||||
TrEMBL | A0A0D3BX07 | 6e-96 | A0A0D3BX07_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6C2T0 | 6e-96 | A0A3P6C2T0_BRAOL; Uncharacterized protein | ||||
TrEMBL | V9LY66 | 6e-96 | V9LY66_BRANA; WRKY transcription factor 69.2 | ||||
STRING | Bo4g108250.1 | 1e-96 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12478 | 19 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58710.2 | 2e-87 | WRKY DNA-binding protein 69 |
Publications ? help Back to Top | |||
---|---|---|---|
|