PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC25741_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 272aa MW: 28894.8 Da PI: 7.5628

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC25741_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	138.5	5.6e-43	47	215	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ RrC25741_p1 47 AVTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGSTLSAPppsksvplyg 144 689****************************************************************99988888888888666667777788888 PP TCP 89 .........................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 ++ ++++++ q+ + ++ +++ s+++ r ++e ++ k++ ++ RrC25741_p1 145 alglthhhhqyeeqgggafgahlgfHHHHLQPQQQHHQQAQGETIPPHRFSSKRYRDSSKEDDEGKQSESK 215 88888888899999999*998765555555555555555556666667777777777776666665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-41	52	205	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.411	53	107	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDLSDDGATA SRHLLDPSLS IVPRSTPPED LTTSSTAPSA AETTSGAVTK RSTKDRHTKV 60 DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIVAATGT GTIPANFSSL 120 SVSLRSSGST LSAPPPSKSV PLYGALGLTH HHHQYEEQGG GAFGAHLGFH HHHLQPQQQH 180 HQQAQGETIP PHRFSSKRYR DSSKEDDEGK QSESKSLKES EPPAGATGAP MWAVAPTNRS 240 AGGNTFWMLP VPTTAAGNQP QPGAVESSSN TN

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456993.1	1e-138	PREDICTED: transcription factor TCP8
Swissprot	Q9C518	1e-110	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A291I312	1e-129	A0A291I312_BRARR; TCP8
TrEMBL	M4EGH2	1e-129	M4EGH2_BRARP; Uncharacterized protein
STRING	Bra027886.1-P	1e-130	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-79	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]