PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25656_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 185aa    MW: 21346.2 Da    PI: 10.0197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25656_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-18103152255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  RrC25656_p1 103 TYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFSTPEMAARAHDVAALAIKG 152
                  69****998.**********854...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.9E-40103166IPR001471AP2/ERF domain
PfamPF008475.3E-12103152IPR001471AP2/ERF domain
PROSITE profilePS5103222.853103160IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21103161IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32103161IPR001471AP2/ERF domain
CDDcd000188.17E-34104162No hitNo description
PRINTSPR003671.6E-10104115IPR001471AP2/ERF domain
PRINTSPR003671.6E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
YTYILGIAYK KNQPLELDVY NNNHTDLFFS NKTLALSQEN HIPFLLYINY LSFMDHSSCR  60
RRYPDPPGHA TARTVNNNNS NPKKKRVVEE ENDDEKIVSK HPTYRGVRMR QWGKWVSEIR  120
EPKKKSRIWL GTFSTPEMAA RAHDVAALAI KGGSAHLNFP ELAYHLPRPA SADPKDSRCC  180
SFGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1797160872Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8423061e-152AY842306.1 Brassica napus transcription factor DREBIII-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467469.11e-88PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP32e-52ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLQ5MAR75e-73Q5MAR7_BRANA; BnaAnng37500D protein
STRINGBra005314.1-P8e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]