PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC25562_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 95aa MW: 10943.8 Da PI: 10.6186 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.4e-14 | 10 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +++ ++G g W+ ++ + gk k+c++rw++yl RrC25562_p1 10 KGAWTAEEDSLLRKCIDKYGEGKWHQVPLRAGK----KSCRLRWLNYL 53 79******************************5....**********7 PP | |||||||
2 | Myb_DNA-binding | 29.2 | 2.1e-09 | 65 | 95 | 7 | 39 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkq 39 +E +ll++++k+lG++ W++Ia +++ gRt+++ RrC25562_p1 65 DEVDLLLRLHKLLGNR-WSLIAGRLP-GRTAND 95 7889************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 5 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.329 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.59E-22 | 8 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-11 | 9 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-12 | 10 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.59E-9 | 12 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-14 | 56 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5 | 58 | 95 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.162 | 58 | 95 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.2E-8 | 65 | 95 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MEGSSKELRK GAWTAEEDSL LRKCIDKYGE GKWHQVPLRA GKKSCRLRWL NYLKPSIKRG 60 KLNCDEVDLL LRLHKLLGNR WSLIAGRLPG RTAND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-17 | 7 | 94 | 1 | 91 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-17 | 7 | 94 | 24 | 114 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM013697 | 1e-116 | KM013697.1 Raphanus sativus MYB transcription factor gene, complete cds; plastid. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444375.1 | 2e-55 | PREDICTED: transcription factor MYB114-like isoform X1 | ||||
Swissprot | Q9FNV9 | 3e-49 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0H3XWN6 | 4e-54 | A0A0H3XWN6_RAPSA; Anthocyanin regulator | ||||
STRING | Bra004162.1-P | 3e-54 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66380.1 | 9e-51 | myb domain protein 114 |
Publications ? help Back to Top | |||
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