PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25562_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 95aa    MW: 10943.8 Da    PI: 10.6186
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25562_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.4e-141053148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll +++ ++G g W+ ++ + gk    k+c++rw++yl
      RrC25562_p1 10 KGAWTAEEDSLLRKCIDKYGEGKWHQVPLRAGK----KSCRLRWLNYL 53
                     79******************************5....**********7 PP

2Myb_DNA-binding29.22.1e-096595739
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     +E +ll++++k+lG++ W++Ia +++ gRt+++
      RrC25562_p1 65 DEVDLLLRLHKLLGNR-WSLIAGRLP-GRTAND 95
                     7889************.*********.****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-17555IPR009057Homeodomain-like
PROSITE profilePS5129422.329557IPR017930Myb domain
SuperFamilySSF466895.59E-22894IPR009057Homeodomain-like
SMARTSM007175.4E-11955IPR001005SANT/Myb domain
PfamPF002493.4E-121053IPR001005SANT/Myb domain
CDDcd001675.59E-91253No hitNo description
Gene3DG3DSA:1.10.10.606.5E-145695IPR009057Homeodomain-like
SMARTSM007175.55895IPR001005SANT/Myb domain
PROSITE profilePS5129413.1625895IPR017930Myb domain
PfamPF002497.2E-86595IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEGSSKELRK GAWTAEEDSL LRKCIDKYGE GKWHQVPLRA GKKSCRLRWL NYLKPSIKRG  60
KLNCDEVDLL LRLHKLLGNR WSLIAGRLPG RTAND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-17794191MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-1779424114MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0136971e-116KM013697.1 Raphanus sativus MYB transcription factor gene, complete cds; plastid.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444375.12e-55PREDICTED: transcription factor MYB114-like isoform X1
SwissprotQ9FNV93e-49MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0H3XWN64e-54A0A0H3XWN6_RAPSA; Anthocyanin regulator
STRINGBra004162.1-P3e-54(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.19e-51myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]