PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2554_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 260aa MW: 29555.9 Da PI: 5.2857 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.8 | 2.5e-10 | 105 | 147 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+r+N+++ Lr l+P +K++K L Av+YI++L RrC2554_p3 105 HSERKRRERLNQRIYALRALVPVM-----TKMNKNGALSDAVDYINEL 147 57*********************8.....8***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.65E-10 | 96 | 152 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-15 | 97 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.481 | 98 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-9 | 104 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-13 | 105 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-8 | 105 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSKSPKWLIN SGLGSKQDMF RTRVLVPVRD GLVELFSFTM KPVDESMVDV IISHCNAFFE 60 PFPEQTFPCG EQAPCLTVMN KQENVVMQAN KKLTNNENFK SKNLHSERKR RERLNQRIYA 120 LRALVPVMTK MNKNGALSDA VDYINELLVE KQKLEDELSG ISEVECRAEE EAVIANPEAE 180 KVSYELIKKE NSNEVNLEVH ETGEGDFLIR VAQEHKRDGF KRLIEAVDSC GLEIIHVNFT 240 RLDLSVMTIL NVKEPGFAPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018432717.1 | 1e-180 | PREDICTED: transcription factor bHLH90-like isoform X1 | ||||
Swissprot | Q0WNR2 | 1e-112 | BH090_ARATH; Transcription factor bHLH90 | ||||
TrEMBL | A0A3P5Y9L0 | 1e-148 | A0A3P5Y9L0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4ESE5 | 1e-148 | M4ESE5_BRARP; Uncharacterized protein | ||||
STRING | Bra031723.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6985 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 1e-114 | bHLH family protein |