PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25501_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 234aa    MW: 26468.6 Da    PI: 6.1498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25501_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-204897255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr+++ +g+WvAeIr p++   r+r +lg+fgtaeeAa a+++a+ +++g
  RrC25501_p1 48 LYKGVRQRH-WGKWVAEIRLPKS---RTRLWLGTFGTAEEAALAYDQAAFQIRG 97
                 59******9.**********954...4***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.75E-3247106No hitNo description
SuperFamilySSF541715.3E-2148105IPR016177DNA-binding domain
SMARTSM003802.3E-3648111IPR001471AP2/ERF domain
PROSITE profilePS5103222.07648105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3048106IPR001471AP2/ERF domain
PRINTSPR003672.1E-104960IPR001471AP2/ERF domain
PfamPF008475.9E-154997IPR001471AP2/ERF domain
PRINTSPR003672.1E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MESKPLGLNQ LTPYQMYQVQ KQLNHRTLSP NRIRTKKLSA SSSNSQKLYK GVRQRHWGKW  60
VAEIRLPKSR TRLWLGTFGT AEEAALAYDQ AAFQIRGDVG KLNFPNIKHE EINSLPSSVD  120
AKLQAICQSL RKTEDTCSVS DKTEDICSVS DKTEDICSAA NKTEHTEMNF SDDSPRNDKN  180
SLWDESKLES SSSEKGIAFL EFSDPEFDEI GRFGLVKFPS VEIDWDAISK LLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2047105160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746921.11e-146ethylene-responsive transcription factor ERF056-like
SwissprotQ9SIE41e-113ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLA0A078GLV81e-145A0A078GLV8_BRANA; BnaA04g12700D protein
TrEMBLA0A3P6CJP41e-145A0A3P6CJP4_BRACM; Uncharacterized protein
STRINGBra030255.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.12e-99ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]