PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC25434_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 445aa MW: 50155.4 Da PI: 4.3379 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.4 | 1.4e-49 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i vdiyk++P +Lp + +k+++++w+fF++r++ky++ r+ r t++gyWkatgkd+ ++ ++ RrC25434_p1 13 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDIYKLDPTELPglSVLKSGDRQWFFFTPRSRKYPNAARSGRCTATGYWKATGKDRVIVY-NS 108 69***************************.89***************644888899**************************************9.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vglkktLvfy+grap+ge+tdWvmhey++ RrC25434_p1 109 RSVGLKKTLVFYRGRAPSGERTDWVMHEYTM 139 9****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.923 | 12 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.84E-56 | 13 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-26 | 14 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MANSCLRGGK FSAPGFRFHP TDEELVVYYL KRKICGRKLR INAIGVVDIY KLDPTELPGL 60 SVLKSGDRQW FFFTPRSRKY PNAARSGRCT ATGYWKATGK DRVIVYNSRS VGLKKTLVFY 120 RGRAPSGERT DWVMHEYTMD EEELGRCNNA KEYYALYKLY KKSGAGPKNG EEYGAPFQEE 180 EWVDDDDDGS EDNVAVPDDH VVRYENNPPR VGDGLLCNPV SVQSDDLDKL LNEIPNAPGV 240 AQRQVNQLVL QGISEEDIES VLLNNPPGDF LAPWDVGKSL PNSHWSFQSN MRSSNSFEAS 300 EVNPAFNTSG IAPLVFDKED YIEMDDLLTP ELGASSVEKP TLFSNPGEYG DFNDFDQLFH 360 EVSMSLDMEP ISQEASLSSV SANDGRQQFL YQQQFQDQTF ENKLNSFMDT NTNVDQFTED 420 MWFKDAQADL YDQPQSYSLA PSSGT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-44 | 14 | 168 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-44 | 14 | 168 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-44 | 14 | 168 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-44 | 14 | 168 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 14 | 168 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-44 | 14 | 168 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-44 | 14 | 168 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435615.1 | 0.0 | PREDICTED: NAC domain-containing protein 16-like | ||||
Swissprot | A4FVP6 | 0.0 | NAC16_ARATH; NAC domain-containing protein 16 | ||||
TrEMBL | A0A0D3CGH3 | 0.0 | A0A0D3CGH3_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g085440.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 1e-174 | NAC domain containing protein 16 |
Publications ? help Back to Top | |||
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