PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC25395_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 17760 Da PI: 8.6183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.6 | 1.1e-16 | 91 | 141 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+W AeI+dps + r +lg f tae+Aa+a+++a+ ++ g RrC25395_p1 91 KKYKGVRKKP-SGKWSAEIWDPSL---KIRRWLGMFPTAEMAARAYDEAAAEFIG 141 59*****999.7*********943...4899*******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.36E-15 | 91 | 131 | No hit | No description |
SMART | SM00380 | 2.2E-25 | 92 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-16 | 92 | 143 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-21 | 92 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.599 | 92 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-9 | 92 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-7 | 93 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.9E-7 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MDYSDNVPSD AQNPIAPRPP ALYLTRDQEH QIMVSALRQV ISNVGSDTSS SNGITGGALP 60 PPDAGPCPLC GITGCYGCAF QQRDNETKKE KKYKGVRKKP SGKWSAEIWD PSLKIRRWLG 120 MFPTAEMAAR AYDEAAAEFI GRISARRGQM NGRGVKELSG GGDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00594 | DAP | Transfer from AT5G67000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482416.1 | 1e-119 | PREDICTED: putative ethylene-responsive transcription factor ERF121 | ||||
Swissprot | Q38Q40 | 5e-69 | EF122_ARATH; Ethylene-responsive transcription factor ERF122 | ||||
TrEMBL | A0A397ZPV4 | 8e-83 | A0A397ZPV4_BRACM; Uncharacterized protein | ||||
STRING | Bra034250.1-P | 2e-77 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67010.1 | 2e-53 | ERF family protein |