PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2535_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 330aa    MW: 37743.7 Da    PI: 8.6264
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2535_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2323e-103987155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ykGV   + +g W A+I+       ++r++lg+f +a eAa+ ++ a  k++g
  RrC2535_p4 39 TRYKGVVLQP-NGNWGAQIYTE-----HRRIWLGTFKSAAEAAASYDSACIKIRG 87
                68********.8******9994.....5*********************999887 PP
2B386.81.9e-27167267186
                 EEEE-..-HHHHTT-EE--HHH.HTT........---............--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkke..........esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                 f k+ltpsdv+k++rlv+pkk+a +h        +   e           +++++++d+  r+W+++++y+++s+++v+t+GW++Fv++++Lke+D ++
  RrC2535_p4 167 FSKELTPSDVGKLNRLVIPKKHAVKHlpfisgdqK---EreegemggalDDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVREKRLKEKDAII 262
                 889***************************97651...33456666666899*********************************************** PP

                 EEE-S CS
          B3  82 Fkldg 86 
                 F++ +
  RrC2535_p4 263 FYHCD 267
                 **754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.17E-203998No hitNo description
SuperFamilySSF541711.83E-124097IPR016177DNA-binding domain
SMARTSM003803.6E-1540105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-154097IPR001471AP2/ERF domain
PROSITE profilePS5103217.0564097IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-31159265IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-27165267IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-26166265No hitNo description
PROSITE profilePS5086311.392167280IPR003340B3 DNA binding domain
SMARTSM010193.2E-21167281IPR003340B3 DNA binding domain
PfamPF023621.1E-24167267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNSLNEAKTT AETSGSSDYG LCLAKPMEQP HVSNTATTTR YKGVVLQPNG NWGAQIYTEH  60
RRIWLGTFKS AAEAAASYDS ACIKIRGIDA NSHRNFPWCE ITTHEPEFQA SYTTEAVLNM  120
IKDCSYQHKF REYLRRRSQM VDFANINIVA SKQSRGGREP FSCTQLFSKE LTPSDVGKLN  180
RLVIPKKHAV KHLPFISGDQ KEREEGEMGG ALDDVEVVFY DRAMRQWKFR YCYWRSSQSF  240
VFTRGWNGFV REKRLKEKDA IIFYHCDVPT SVKTLQGQSN SFLMIDVDYF TDKGSVAPKE  300
VDKMVHNASE EEMRTETKPG GFMLFGVRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2316626313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489248.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-165RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLM4DQV10.0M4DQV1_BRARP; Uncharacterized protein
STRINGBra018894.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-158RAV family protein