PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC252_p6
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 506aa    MW: 54977.5 Da    PI: 8.3017
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC252_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.12e-34229285259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnhe
  RrC252_p6 229 DDGYNWRKYGQKQVKGSEFPRSYYKCTSQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 285
                8****************************************.***************8 PP
2WRKY105.52.7e-33397455159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  RrC252_p6 397 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCGVRKHVERAATDPKAVVTTYEGKHNHD 455
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30223287IPR003657WRKY domain
SuperFamilySSF1182901.83E-26227287IPR003657WRKY domain
SMARTSM007744.4E-39228286IPR003657WRKY domain
PfamPF031061.7E-26229285IPR003657WRKY domain
PROSITE profilePS5081125.545229287IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36382457IPR003657WRKY domain
SuperFamilySSF1182901.18E-29389457IPR003657WRKY domain
PROSITE profilePS5081138.32392457IPR003657WRKY domain
SMARTSM007743.2E-39397456IPR003657WRKY domain
PfamPF031065.9E-26398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MSEKEELPST SNKSTGAPSR PTLSLPPRPF TEMFFNGGVG FSPGPMTLVS NMFPDSDEFR  60
SFSQLLSGVM PSPAPAPAPA PAAASSAASE EEGDNNSSSG DVDPRFKQSR PTGLTISQSP  120
PSTMFAVPPG LSPAMRLDSP SFLGLFSPIQ GSYGMTHQQA LAQVTAQAVQ ANANNMLQPQ  180
TDYPPSSQSQ VSSVQPPQSQ ATAPRETSDT TTIIEHRSQQ PLNVDKPADD GYNWRKYGQK  240
QVKGSEFPRS YYKCTSQGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNNRDSTA  300
NLNGSSVNNN NTSNKTTREQ HEAASQATTE QMSEASDSEE VGNGETGVRK KVEDEPDPKR  360
RSTEVRVTEP AAAAATSHRT VTEPRIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY  420
YKCTTQGCGV RKHVERAATD PKAVVTTYEG KHNHDLPASK SSSHSAAAAA HLRLENRPGG  480
SANNLNQQQQ QQQPVARLRL KEEQII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-45229458878Probable WRKY transcription factor 4
2lex_A4e-45229458878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300280.0KF430028.1 Brassica rapa WRKY transcription factor 4 (WRKY4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438796.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLV5RG410.0V5RG41_BRACM; WRKY transcription factor 4
STRINGBra019697.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]