PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2526_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 436aa MW: 50149.9 Da PI: 7.345 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.2 | 1.2e-37 | 152 | 313 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec.... 73 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++ s++++s+ RrC2526_p1 152 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIANSlsnqfnhggfssgddsqtrpalgSAETSSDLcela 250 5799************************************************************99999999888877776666555333333332333 PP TCP 74 eaesssssasnsssg.................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + + ++ k+k s +++ +++k+ rakar+ra++rt ek +++ RrC2526_p1 251 S-------------MwtvedrgsntsmtenkvDGRTMRGKRKMS-QRTPILKEMSKDARAKARERAKDRTMEKIMKR 313 2.............022222222244455443333333333333.33334678888*****************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.7E-40 | 153 | 312 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.724 | 154 | 212 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.467 | 292 | 309 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MNNNKTFSTT STINEDYMSF PYSDNYCSQP LLPFSPSSSI NNLLIHSNSN TENNHLDHHH 60 HRFLQAPSPF SQFEFVQDFP LLPSFLPQNI GHDDNQPITT NDHHHHPSLL PLNNTIGESQ 120 LIEPSESITT HNEDSQRIST SQDPKMKKVK KPSRTDRHSK IKTAKGTRDR RMRLSLDVAK 180 ELFGLQDMLG FDKASKTVEW LLTQAKPEII KIANSLSNQF NHGGFSSGDD SQTRPALGSA 240 ETSSDLCELA SMWTVEDRGS NTSMTENKVD GRTMRGKRKM SQRTPILKEM SKDARAKARE 300 RAKDRTMEKI MKRRPQVNAV EEVEAHNQRD EVVKNNNNTD VNWTNSFEAM PCREDLEELC 360 KNNRFSVYND FIVNKKEHIS DESYNMISKL NSSFPVLTHH RSQGEATFME QQQQQVRDVY 420 HFLGKPRDFM YCDNIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439441.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP18-like | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A398ARF0 | 0.0 | A0A398ARF0_BRACM; Uncharacterized protein | ||||
STRING | Bo1g117490.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-158 | TCP family protein |