PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC25238_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 119aa    MW: 13896.1 Da    PI: 10.7973
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC25238_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-0847102147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT+eE+  l+ +v+++  +      W++I ++ +    ++Rt+ ++k++w++ 
      RrC25238_p2  47 RLLWTPEEEYMLKVGVEKFAAEakknmPWRKILEMGQkvfhETRTPTDLKDKWRNM 102
                      677******************9***********9999*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.4142103IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.5E-1043108IPR009057Homeodomain-like
SuperFamilySSF466891.2E-1045104IPR009057Homeodomain-like
PfamPF002498.5E-749102IPR001005SANT/Myb domain
CDDcd116604.55E-1050103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MTSLALVVTS PPGRMMNQQR EDSRTAKVDN SKTVRDIPIF KMEHKRRLLW TPEEEYMLKV  60
GVEKFAAEAK KNMPWRKILE MGQKVFHETR TPTDLKDKWR NMTGARQKNK QDSTSVSGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893058e-63AC189305.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB031O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454377.12e-75PREDICTED: uncharacterized protein LOC108825563
TrEMBLM4F5252e-70M4F525_BRARP; Uncharacterized protein
STRINGBra036179.1-P3e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.12e-07telomere repeat binding factor 3