PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2512_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB

Protein Properties

Length: 275aa MW: 31596.5 Da PI: 5.4353

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2512_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd lv ++ ++G g+W++ +++ g+ R++k+c++rw++yl RrC2512_p1 14 KGEWTAEEDRMLVAYISEYGLGDWRAMPKRAGLQRCGKSCRLRWLNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	57.3	3.6e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++++ lG++ W++Ia+ m+ +Rt++++k++w++ RrC2512_p1 67 RGKFTPQEEEDIIKLHSVLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111 89******************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.223	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.6E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	6.80E-11	16	61	No hit	No description
PROSITE profile	PS51294	26.409	62	116	IPR017930	Myb domain
SMART	SM00717	4.8E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.93E-10	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-26	69	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGRTTWFDED GLKKGEWTAE EDRMLVAYIS EYGLGDWRAM PKRAGLQRCG KSCRLRWLNY 60 LRPGIKRGKF TPQEEEDIIK LHSVLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLVRRG 120 IDPMTHEPVV KATSSSTMLS PTLTPSSCSS SFSSTSSARL LNRLAAGISS RKHGLDRIKN 180 VILSEPRQAV EENKLMISSK EDEEEEVNGC FMEIDDNLIS TTSLDELLCE PYDLYQSDFY 240 HETGHYDLYQ SDFYHETDDQ LELFLEIHSF GQDLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269\|PubMed:18805951, ECO:0000269\|PubMed:21070410, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738285	0.0	KF738285.1 Brassica napus MYB transcription factor 95 (MYB95.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444199.1	0.0	PREDICTED: myb-related protein 308-like
Swissprot	Q9LE63	2e-61	MY106_ARATH; Transcription factor MYB106
TrEMBL	A0A397YNY7	1e-143	A0A397YNY7_BRACM; Uncharacterized protein
STRING	Bra003801.1-P	1e-142	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74430.1	1e-110	myb domain protein 95