PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC25023_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 195aa MW: 21927.1 Da PI: 8.6446

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC25023_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.3	2.8e-08	71	115	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq RrC25023_p1 71 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 115 577899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-11	63	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.309	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-10	68	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.9E-6	71	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-8	71	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.47E-4	86	118	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDSFLPTSKR QRLCNSSYHC NTHNHFPNPN LAFVPEASIF PEFRVPDFPL AFEVGRGDQE 60 GTKKPTLSSQ SIAARERRRR IADKTQELTK LIPGGQKLNT AEMFQAAAKY VKFLQSQVGI 120 LQMMQTTKKT QGISNAEIEA QVLLGSQAIQ EKLSTEEVCL VPCEMVRDLT SEESIWKNPK 180 ISREITKLLS TDLAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482308.1	1e-123	PREDICTED: transcription factor bHLH53-like isoform X1
Swissprot	Q84RD0	9e-91	BH053_ARATH; Transcription factor bHLH53
TrEMBL	A0A078I0N0	1e-118	A0A078I0N0_BRANA; BnaA04g20390D protein
STRING	Bra021933.1-P	1e-118	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	4e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]