PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2500_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 305aa MW: 34156.6 Da PI: 7.1544

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2500_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85.3	5.8e-27	196	255	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ k ++ pr+YYrC+++ +Cpv+k+v+r+ ++d+++ +tYeg+H+h+ RrC2500_p2 196 NDGCQWRKYGQKTAKANPLPRAYYRCSMSsNCPVRKQVQRCgEDDTSAYMTTYEGTHDHP 255 8*************************99******934578899********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.5E-28	180	257	IPR003657	WRKY domain
PROSITE profile	PS50811	24.593	190	257	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-24	191	257	IPR003657	WRKY domain
SMART	SM00774	9.6E-33	195	256	IPR003657	WRKY domain
Pfam	PF03106	2.4E-25	196	255	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MIPIRAGINM EVELDATKAK LEKVREENEK LKLLLSTVLT DYKSLQMHVS RVFRPQYEAS 60 MEPDINSHDD FGVDISLRLG RPDLNVSKSV DEIDKISLDK ISDEISEGSD KKRSALGLGF 120 RIRSCEDLYT DQTMKLDCLC KDVKIKNVDN KCISSRKDVK ATRNEDHREV LEGQEQTGLK 180 KTRVCVKAPC EDPSINDGCQ WRKYGQKTAK ANPLPRAYYR CSMSSNCPVR KQVQRCGEDD 240 TSAYMTTYEG THDHPLPMEA TNMAAGTSAA ASLLQSGSSS SASLSYFFPF HNVSFSTTNS 300 HPTLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-19	195	257	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912404	0.0	EU912404.1 Brassica napus WRKY transcription factor 36 (WRKY36.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454553.1	0.0	PREDICTED: probable WRKY transcription factor 36
Swissprot	Q9CAR4	1e-133	WRK36_ARATH; Probable WRKY transcription factor 36
TrEMBL	A0A397YXU6	1e-179	A0A397YXU6_BRACM; Uncharacterized protein
STRING	Bo6g110430.1	1e-179	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13913	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69810.1	1e-127	WRKY DNA-binding protein 36

Publications ? help Back to Top
Yang Y, et al. UVR8 interacts with WRKY36 to regulate HY5 transcription and hypocotyl elongation in Arabidopsis. Nat Plants, 2018. 4(2): p. 98-107 [PMID:29379156]