PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2499_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-X1
Protein Properties Length: 1102aa    MW: 119985 Da    PI: 8.1018
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2499_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.98.7e-08306324119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C+++CH GpC+pC+
  RrC2499_p1 306 CGRHRCERTCHVGPCDPCQ 324
                 ******************6 PP
2zf-NF-X120.97.7e-07370387118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C++ CH+GpC++C
  RrC2499_p1 370 CGNHFCSEVCHPGPCGVC 387
                 ****************** PP
3zf-NF-X124.27.3e-08429446118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG H+C++ CH G+CppC
  RrC2499_p1 429 CGLHTCSEVCHSGDCPPC 446
                 ****************** PP
4zf-NF-X116.42.1e-05527545119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C++ CH G CppC 
  RrC2499_p1 527 CGQHSCESSCHSGHCPPCL 545
                 ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.66E-5127197No hitNo description
PROSITE profilePS500168.911135196IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.465138194IPR001841Zinc finger, RING-type
PROSITE patternPS013590138193IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.90E-5227289No hitNo description
SMARTSM004380.023251269IPR000967Zinc finger, NF-X1-type
PfamPF014228.2253268IPR000967Zinc finger, NF-X1-type
CDDcd060085.26E-13296344No hitNo description
SMARTSM004384.0E-5306325IPR000967Zinc finger, NF-X1-type
PfamPF014223.3E-6306323IPR000967Zinc finger, NF-X1-type
CDDcd060086.89E-8364405No hitNo description
SMARTSM004383.3E-5370389IPR000967Zinc finger, NF-X1-type
PfamPF014222.0E-5370387IPR000967Zinc finger, NF-X1-type
CDDcd060082.19E-13419466No hitNo description
SMARTSM004383.5E-6429448IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-7429446IPR000967Zinc finger, NF-X1-type
SMARTSM00438110488519IPR000967Zinc finger, NF-X1-type
PfamPF0142218488499IPR000967Zinc finger, NF-X1-type
CDDcd060082.41E-9517569No hitNo description
SMARTSM004380.0011527546IPR000967Zinc finger, NF-X1-type
PfamPF014229.6E-4527544IPR000967Zinc finger, NF-X1-type
CDDcd060082.46E-6574621No hitNo description
SMARTSM004380.013584602IPR000967Zinc finger, NF-X1-type
PfamPF0142221592601IPR000967Zinc finger, NF-X1-type
SMARTSM004380.088637667IPR000967Zinc finger, NF-X1-type
PfamPF014220.15637652IPR000967Zinc finger, NF-X1-type
CDDcd060082.10E-4665714No hitNo description
SMARTSM004380.14676697IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.5E-4928971IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1102 aa     Download sequence    Send to blast
MSSQVRRDRP RSNPHQTWVP RGAASSALVN EPSLPPANTD SAATAAAASR PIRQRNCSGR  60
PSYNHHQRSN NVAGPPPPNR QRTNNAPGIL PDNRHRVASR TQGKKVVKEE NTVLTTDPNL  120
PQLVQELQDK LVKSSIECMI CYDMVGRSAN IWSCSSCYSI FHMHCIKKWA RAPTSVDLLA  180
EKNQGDNWRC PGCQSVQLTS SREICYRCFC GKRKDPPSDP YLTPHSCGEP CGKPLEREFS  240
AAAETSEEDR CPHVCVLQCH PGPCPPCKAF APPRSCPCGK KMVHTRCSER RSVLVCGQRC  300
EKLLNCGRHR CERTCHVGPC DPCQVPVNAT CFCKKKVETV ICGEMNVKGE LKAEDGVYSC  360
NFNCGKPLGC GNHFCSEVCH PGPCGVCDLL PSRVKTCYCG KTRLEEQSRR SCLDPIPSCS  420
NTCRKFLPCG LHTCSEVCHS GDCPPCLVKV NQKCRCGSTS RTVECYFTTS SETEKFVCAK  480
PCGRKKNCGR HRCSERCCPL LNSKKNDLSG DWDPHACQLP CGKNLRCGQH SCESSCHSGH  540
CPPCLEMIFT DLTCACGRTS ISPPLPCGTP VPSCQLPCSI PQPCGHSVTH GCHFGDCPPC  600
SAPVEKKCVG GHVVLRNIPC GLKDIRCNKI CGKTRRCGLH ACARTCHPEP CDSHSESEAV  660
LRVTCGQTCG APRRDCRHVC AALCHPSLPC PDSRCEFPVT ITCSCGRITA TVPCDAGGDS  720
ASNLRVDSVS ETSVLQKLPT PLQPVDMSGN RVPLGQRKLS CDDECAKQER KRVLQDAFDI  780
TPPNLDSLHF SENSAMTEII SDIYRRDPKW VLAVEERFKF LVLGKAKGST SALRVHVFCP  840
MQKDKLDTVR LLAERWKLAV SNGGWEPKKF VVVHVTQKSK PPTRIIGARG GAISVGGPHP  900
PSFDPLVDMD PRLVVSLLDL PREANVSAVV LRFGGECELV WLNDKNALAV FHDPARAATA  960
MRRLDHGSVY NGAAVVQNAA QSQSLGNAWG KLPSSSSWDV QKANPWKKAV IEESDESWGA  1020
EDSPIGGSST DIQASAWRSA TSNAPIVTSA NRWSVLEPEK PKTFALEPLV QSGGSSSSEA  1080
AGKQLVEGSG EEVVDDWEKV CE
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895190.0AC189519.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441046.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A3P6GFB00.0A0A3P6GFB0_BRAOL; Uncharacterized protein
STRINGBo8g059130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1