PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2494_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 271aa    MW: 30512.6 Da    PI: 6.8758
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2494_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-11311051288
                 HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
          B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                 ++++ ++p +f+++  g    +  +++  ++g+sW++ l+ +k++  ++ ++ W eFv++n L  +D+++F++++++
  RrC2494_p2  31 SKSMRIIPEEFVRSAPGA--FEHRVVFSVRWGNSWQLWLQRDKNGLLFMEEEDWDEFVNDNFLAPNDVLLFTHVDTM 105
                 556789******999655..3446***************55555555*************************88743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1314115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1415114IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-1217113No hitNo description
SMARTSM010194.3E-1319115IPR003340B3 DNA binding domain
PROSITE profilePS5086311.25120115IPR003340B3 DNA binding domain
PfamPF023622.0E-931104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-4171258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-5171258IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.016178270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSGKSVNNMV QDNGSKPRFC KSLSLGETWT SKSMRIIPEE FVRSAPGAFE HRVVFSVRWG  60
NSWQLWLQRD KNGLLFMEEE DWDEFVNDNF LAPNDVLLFT HVDTMFIEVR IYKQDSHHLK  120
ESTSAPLQAD PQAEVVNPVP QNSPLETPAP ASASGARQVD GLVRNPEQYL SNPSNPFFVK  180
TLGKKNDVLY VSHLVTAKYG LQFGPHDSPM FYLLPNEKIE AATKIYGGCP CFSGLAAICR  240
KYKLKQGDTV VFELERSGGV VTAVRLHFRN E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481511.11e-178PREDICTED: B3 domain-containing protein At5g25470-like
SwissprotQ1PDT62e-97Y5547_ARATH; B3 domain-containing protein At5g25470
TrEMBLA0A3N6RVG81e-166A0A3N6RVG8_BRACR; Uncharacterized protein
TrEMBLM4D0441e-168M4D044_BRARP; Uncharacterized protein
STRINGBra009842.1-P1e-168(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25470.21e-99B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]