PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC24601_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 351aa MW: 38211.6 Da PI: 6.7128

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC24601_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++a++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrn+PvGgg+rknk+s+ RrC24601_p1 51 KDQAINCPRCNSVNTKFCYYNNYSLTQPRFFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 111 7899******************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	49	109	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-33	52	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MDTAQWPQEI VVKPLEEIVT NTCPTPQASE PQPPPSVGEA GGAERKTRPE KDQAINCPRC 60 NSVNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSTSSSSD 120 ISRNYLDSTQ PATKKHHSDQ HHHHHLISIS QQGLTGQNPK ILETTQQDLG FSPHGLIRTN 180 FTDLIHNIGN NNTSTNNPFL GSSCSATSAL AISPLDLIRN NNGNNRNTSN SSFMGFPVHN 240 QGPTSEGFSM QDHYKPSNSN TTLLGFSLDH HDDNSGFHGG FQGGEEREDG DDVNGRDLFP 300 FEDLKLPVSS SSATINVDVN DHQKRTSGGD ADAAATSGGY WTGMLSGGSW C

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MDTAQWPQEI VVKPLEEIVT NTCPTPQASE PQPPPSVGEA GGAERKTRPE KDQAINCPRC  60
NSVNTKFCYY NNYSLTQPRF FCKGCRRYWT EGGSLRNIPV GGGSRKNKRS HSSSTSSSSD  120
ISRNYLDSTQ PATKKHHSDQ HHHHHLISIS QQGLTGQNPK ILETTQQDLG FSPHGLIRTN  180
FTDLIHNIGN NNTSTNNPFL GSSCSATSAL AISPLDLIRN NNGNNRNTSN SSFMGFPVHN  240
QGPTSEGFSM QDHYKPSNSN TTLLGFSLDH HDDNSGFHGG FQGGEEREDG DDVNGRDLFP  300
FEDLKLPVSS SSATINVDVN DHQKRTSGGD ADAAATSGGY WTGMLSGGSW C

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018460126.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q8LAP8	1e-163	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	M4D248	0.0	M4D248_BRARP; Uncharacterized protein
STRING	Bra010548.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-139	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]