PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC2455_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 207aa MW: 23224.7 Da PI: 6.3995 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 80 | 140 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ RrC2455_p2 80 RNRWTPTSTQLQILESIYEErSGTPNRRRIREIAAELsehgQITETNVYNWFQNRRARSKR 140 89*****************98**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 96.6 | 2e-31 | 79 | 142 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++ tPn+++i++i+aeL+e+G+i+++NV++WFQNr+aR+++kq RrC2455_p2 79 TRNRWTPTSTQLQILESIYEERSGTPNRRRIREIAAELSEHGQITETNVYNWFQNRRARSKRKQ 142 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 74 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.046 | 76 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-14 | 78 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-18 | 78 | 142 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.57E-15 | 80 | 142 | No hit | No description |
Pfam | PF00046 | 2.4E-18 | 80 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MEKESQNGAY VGRGVMTEEQ METLRKQIAV YAVICEQLAL LHNSLSSFHP LSSGMNPNGG 60 GYFDPMVVAS SSAHQRISTR NRWTPTSTQL QILESIYEER SGTPNRRRIR EIAAELSEHG 120 QITETNVYNW FQNRRARSKR KQTPHTTTTD TGPAEDAAVV TTDEKRSCGD SGGFESYEHI 180 LFPSPDLGIE HLLSRGELSG EFNSYRL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 133 | 141 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189247 | 1e-129 | AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482212.1 | 1e-154 | PREDICTED: WUSCHEL-related homeobox 14-like | ||||
Swissprot | Q9LM84 | 1e-109 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A0D3CBV0 | 1e-129 | A0A0D3CBV0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397YXH0 | 1e-129 | A0A397YXH0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EAN0 | 1e-129 | M4EAN0_BRARP; Uncharacterized protein | ||||
STRING | Bra025839.1-P | 1e-130 | (Brassica rapa) | ||||
STRING | Bo5g030590.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-108 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|