PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2427_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 360aa MW: 39753.4 Da PI: 8.9516

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2427_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.3	9.5e-07	46	65	38	57
TS-HHHHHHHHHHHHHHHHC CS Homeobox 38 gLterqVkvWFqNrRakekk 57 ++ +++V++WFqNr+ + k+ RrC2427_p1 46 QVGDANVFYWFQNRKSRSKH 65 67799************995 PP
2	Wus_type_Homeobox	44.4	4.1e-15	41	66	39	64
Wus_type_Homeobox 39 LeeyGkiedkNVfyWFQNrkaRerqk 64 +eyG+++d+NVfyWFQNrk+R+++k RrC2427_p1 41 FSEYGQVGDANVFYWFQNRKSRSKHK 66 689*********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MASSNRHWPS MFKSKPHHHQ WQHDINSPLL PSPASHRSSP FSEYGQVGDA NVFYWFQNRK 60 SRSKHKLRLL HNHSKHSLPP PQPQPQPQPI SSASSSSSSS SSSSKSTKPR KSKNKNNNNN 120 NNNTNLSLGG SQMMGMFPPE ASFLFPTSSV GGFEGIPVSS QLGFFPGDMI EQPKQTPPTV 180 GPCTGILLSE IMNASAGYET HNHQQSGEKE DEVKMLQQQQ PQICYAATSD QINSYNNINN 240 NIMLHVPPTT STTTTSNPLA IVPSTLDQLQ VQAAGARIRV FINEMEFEVS PGQFNVRDAF 300 GEEVVLINSA GQPIVTDEYG VAIHPLQHGA SYYLVLSSRV GDLGLKMKLR HVSFFHYLSY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MASSNRHWPS MFKSKPHHHQ WQHDINSPLL PSPASHRSSP FSEYGQVGDA NVFYWFQNRK  60
SRSKHKLRLL HNHSKHSLPP PQPQPQPQPI SSASSSSSSS SSSSKSTKPR KSKNKNNNNN  120
NNNTNLSLGG SQMMGMFPPE ASFLFPTSSV GGFEGIPVSS QLGFFPGDMI EQPKQTPPTV  180
GPCTGILLSE IMNASAGYET HNHQQSGEKE DEVKMLQQQQ PQICYAATSD QINSYNNINN  240
NIMLHVPPTT STTTTSNPLA IVPSTLDQLQ VQAAGARIRV FINEMEFEVS PGQFNVRDAF  300
GEEVVLINSA GQPIVTDEYG VAIHPLQHGA SYYLVLSSRV GDLGLKMKLR HVSFFHYLSY

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438234.1	1e-179	PREDICTED: WUSCHEL-related homeobox 9-like
Swissprot	Q6X7J4	1e-136	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	A0A078FWA3	1e-166	A0A078FWA3_BRANA; BnaA05g09770D protein
TrEMBL	A0A397Z8W8	1e-166	A0A397Z8W8_BRACM; Uncharacterized protein
TrEMBL	A0A3P5ZBW9	1e-166	A0A3P5ZBW9_BRACM; Uncharacterized protein
TrEMBL	M4CMM6	1e-166	M4CMM6_BRARP; Uncharacterized protein
STRING	Bra005464.1-P	1e-167	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7206	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-121	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]