PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC24276_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 122aa MW: 13402.6 Da PI: 7.7706 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 53.2 | 6.2e-17 | 94 | 122 | 4 | 32 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryf 32 l+cprC+s+ntkfCy+nny+l+qPr+f RrC24276_p1 94 GPLNCPRCNSANTKFCYFNNYNLTQPRHF 122 5789************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-18 | 77 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-13 | 95 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 16.209 | 96 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MVFSSISSFL DPPINWPQSA NSNNHPNHPH QLHLQETGNL VSGHQVHSHQ FPPNPNPNHN 60 HADTTAAATG DHAGLSGSAS ERARLAKNSH PPEGPLNCPR CNSANTKFCY FNNYNLTQPR 120 HF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018478155.1 | 8e-71 | PREDICTED: dof zinc finger protein DOF2.2 isoform X1 | ||||
Refseq | XP_018478157.1 | 5e-71 | PREDICTED: dof zinc finger protein DOF2.2 isoform X3 | ||||
Swissprot | Q9ZV33 | 3e-57 | DOF22_ARATH; Dof zinc finger protein DOF2.2 | ||||
TrEMBL | A0A0D3C2Q4 | 9e-66 | A0A0D3C2Q4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CIW7 | 9e-66 | A0A3P6CIW7_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g166830.1 | 2e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5336 | 17 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.1 | 1e-35 | Dof family protein |
Publications ? help Back to Top | |||
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