PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2403_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bHLH | ||||||||
Protein Properties | Length: 450aa MW: 49803.7 Da PI: 6.677 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 9e-12 | 268 | 310 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L RrC2403_p2 268 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 310 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-16 | 264 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 267 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.76E-13 | 268 | 314 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 268 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.57E-6 | 379 | 439 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010444 | Biological Process | guard mother cell differentiation | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MNGDGTWLGE PSQAGDNDES GTWVRNTEEN WFNNPQPLHH NDLRFSGGLP LNPSENLLLL 60 LQQQSIDTSS PLQHFTLDPA PQQQQQQEQS FLATKACFTS LLNVPTSNTN NNPFDELGFS 120 SGFLGQTHVN QTPNSMSFSG LSSPPDFLSS RSTHLPEKTT GVGNRFTPLE FTGVANGVFE 180 NRAKVLKPLD VLASPTSQPT LFQKRAAMRQ SSSSKTCNSE SSSEIRRSSY ERENLDDAST 240 GITDIISDEH NNNNNKGKKK GMPAKNLMAE RRRRKKLNDR LYMLRSVVPK ISKMDRASIL 300 GDAIDYLKEL LQRINDLHTE LESTAPPSSS SLHPLTPTTQ TLSYRVKEEL CPSSSSFPSP 360 KDQQARIEVK LREGKAVNIH MFCGRRPGLL LSTMRALDNL GLDVQQAVVS CFNGFALDVF 420 RAEQCQEGHD VVPEQIKAVL LDTVGYTGLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 275 | KKKGMPAKNLMAERRRRKK |
2 | 269 | 276 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118011 | 0.0 | AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13. | |||
GenBank | BT005377 | 0.0 | BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds. | |||
GenBank | EU369670 | 0.0 | EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604461.1 | 0.0 | PREDICTED: transcription factor SCREAM2-like | ||||
Refseq | XP_013604462.1 | 0.0 | PREDICTED: transcription factor SCREAM2-like | ||||
Refseq | XP_013657322.1 | 0.0 | transcription factor SCREAM2-like | ||||
Refseq | XP_013657324.1 | 0.0 | transcription factor SCREAM2-like | ||||
Refseq | XP_013657326.1 | 0.0 | transcription factor SCREAM2-like | ||||
Swissprot | Q9LPW3 | 0.0 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | A0A078HA67 | 0.0 | A0A078HA67_BRANA; BnaC03g57010D protein | ||||
TrEMBL | A0A0D3DPE4 | 0.0 | A0A0D3DPE4_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G8D9 | 0.0 | A0A3P6G8D9_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g065080.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1952 | 27 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 1e-162 | bHLH family protein |