PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC23860_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LSD | ||||||||
Protein Properties | Length: 192aa MW: 20311.4 Da PI: 8.6217 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 51 | 2.3e-16 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L+YPrGA++VRCalC+ V RrC23860_p1 7 CHGCRNTLMYPRGATNVRCALCHIV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 49.2 | 8.8e-16 | 58 | 82 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L+Y+rGA+sVRC++C+tV RrC23860_p1 58 CGGCRTMLMYTRGATSVRCSCCQTV 82 ************************9 PP | |||||||
3 | zf-LSD1 | 50.3 | 3.9e-16 | 99 | 123 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GA+sV+Ca+C++V RrC23860_p1 99 CGNCRTTLMYPYGASSVKCAICQFV 123 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.4E-17 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.4E-13 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-18 | 55 | 85 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.1E-13 | 58 | 82 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.6E-14 | 96 | 126 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-14 | 99 | 123 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MQDQLVCHGC RNTLMYPRGA TNVRCALCHI VNMVPLHPPP PPHHHAAHAG MDMAHIVCGG 60 CRTMLMYTRG ATSVRCSCCQ TVNLVPGPPP SNQVAHINCG NCRTTLMYPY GASSVKCAIC 120 QFVTNVNMSN GRVPLASNRP NGTASPGTMP STSTQSTPPS QTQTVVVENP MSVNESGKLV 180 SNVVVGVTTG QK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF453322 | 0.0 | AF453322.1 Brassica oleracea zinc finger protein LSD1 (LSD1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467970.1 | 1e-136 | PREDICTED: protein LSD1 isoform X3 | ||||
Swissprot | P94077 | 2e-85 | LSD1_ARATH; Protein LSD1 | ||||
TrEMBL | E2IPA7 | 1e-120 | E2IPA7_BRACM; Zinc finger protein | ||||
STRING | Bra013460.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5345 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 4e-84 | LSD family protein |
Publications ? help Back to Top | |||
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